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Autotools: Up and Running in 15 Minutes Using the Following Material

Autotools — *nix and all other platforms
Cmake — Windows only

Best Autotools Intro

Part 1 of 3:

Part 2 of 3:

Part 3 of 3:

For more details, use the following:

Making configure Scripts 

A brief introduction to the GNU Autotools &c 

An argument against Autotools and in favor of CMake